J4_9BS0_001

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

9BS0|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BS0_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1832

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|C|271
9BS0|1|A|C|272
*
9BS0|1|A|G|417
9BS0|1|A|A|418
9BS0|1|A|G|419
9BS0|1|A|U|420
9BS0|1|A|A|421
9BS0|1|A|C|422
*
9BS0|1|A|G|446
9BS0|1|A|G|447
9BS0|1|A|A|448
9BS0|1|A|A|449
9BS0|1|A|U|450
9BS0|1|A|C|451
9BS0|1|A|C|452
9BS0|1|A|G|453
*
9BS0|1|A|C|468
9BS0|1|A|A|469
9BS0|1|A|A|470
9BS0|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains