J4_9BS0_006

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9BS0|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BS0_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1449

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9BS0|1|A|U|1352
9BS0|1|A|C|1353
*
9BS0|1|A|G|1377
9BS0|1|A|G|1378
9BS0|1|A|U|1379
9BS0|1|A|U|1380
9BS0|1|A|A|1381
9BS0|1|A|G|1382
*
9BS0|1|A|C|1443
9BS0|1|A|C|1444
*
9BS0|1|A|G|1642
9BS0|1|A|C|1643
9BS0|1|A|C|1644
9BS0|1|A|C|1645
9BS0|1|A|G|1646
9BS0|1|A|U|1647
9BS0|1|A|A|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23