J4_9BS0_008

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BS0_008 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2035

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9BS0|1|A|G|2672
9BS0|1|A|A|2673
9BS0|1|A|G|2674
9BS0|1|A|C|2675
*
9BS0|1|A|G|2703
9BS0|1|A|A|2704
9BS0|1|A|C|2705
*
9BS0|1|A|G|2760
9BS0|1|A|G|2761
9BS0|1|A|A|2762
9BS0|1|A|C|2763
9BS0|1|A|G|2764
*
9BS0|1|A|C|2798
9BS0|1|A|C|2799
9BS0|1|A|C|2800

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain G

Large ribosomal subunit protein uL13

Chain H

Large ribosomal subunit protein uL14