J4_9BSS_001

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BSS_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1179

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9BSS|1|A|U|340
9BSS|1|A|G|341
9BSS|1|A|A|342
9BSS|1|A|A|343
9BSS|1|A|G|344
*
9BSS|1|A|C|360
9BSS|1|A|G|361
9BSS|1|A|C|362
9BSS|1|A|C|363
*
9BSS|1|A|G|367
9BSS|1|A|G|368
9BSS|1|A|A|369
*
9BSS|1|A|U|381
9BSS|1|A|G|382
9BSS|1|A|U|383
9BSS|1|A|A|384
9BSS|1|A|G|385

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain P

Large ribosomal subunit protein uL24