J4_9BSS_004

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9BSS|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BSS_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.119

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9BSS|1|A|G|1349
9BSS|1|A|U|1350
9BSS|1|A|U|1351
9BSS|1|A|U|1352
9BSS|1|A|C|1353
*
9BSS|1|A|G|1377
9BSS|1|A|G|1378
9BSS|1|A|U|1379
9BSS|1|A|U|1380
9BSS|1|A|A|1381
9BSS|1|A|G|1382
*
9BSS|1|A|C|1443
9BSS|1|A|C|1444
*
9BSS|1|A|G|1642
9BSS|1|A|C|1643
9BSS|1|A|C|1644
9BSS|1|A|C|1645
9BSS|1|A|G|1646
9BSS|1|A|U|1647
9BSS|1|A|A|1648
9BSS|1|A|C|1649

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23

Chain U

Large ribosomal subunit protein bL34