J4_9BSS_009

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BSS_009 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1858

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9BSS|1|A|G|2672
9BSS|1|A|A|2673
9BSS|1|A|G|2674
9BSS|1|A|C|2675
*
9BSS|1|A|G|2703
9BSS|1|A|A|2704
9BSS|1|A|C|2705
*
9BSS|1|A|G|2760
9BSS|1|A|G|2761
9BSS|1|A|A|2762
9BSS|1|A|C|2763
9BSS|1|A|G|2764
*
9BSS|1|A|C|2798
9BSS|1|A|C|2799
9BSS|1|A|C|2800

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain G

Large ribosomal subunit protein uL13

Chain H

Large ribosomal subunit protein uL14