J4_9BUP_005

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UU*AGUAA*UAUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|1829
9BUP|1|AA|G|1830
*
9BUP|1|AA|U|1848
9BUP|1|AA|U|1849
*
9BUP|1|AA|A|1972
9BUP|1|AA|G|1973
9BUP|1|AA|U|1974
9BUP|1|AA|A|1975
9BUP|1|AA|A|1976
*
9BUP|1|AA|U|1992
9BUP|1|AA|A|1993
9BUP|1|AA|U|1994
9BUP|1|AA|C|1995
9BUP|1|AA|C|1996

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AX

60S ribosomal protein L22

Chain Aa

60S ribosomal protein L34

Chain Ad

60S ribosomal protein L38