J4_9BUP_009

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAA*UC*GUU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9BUP_009 not in the Motif Atlas

Homologous match to J4_8CRE_009

Geometric discrepancy: 0.13

The information below is about J4_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BUP|1|AA|U|3396
9BUP|1|AA|A|3397
9BUP|1|AA|A|3398
*
9BUP|1|AA|U|3428
9BUP|1|AA|C|3429
*
9BUP|1|AA|G|3482
9BUP|1|AA|U|3483
9BUP|1|AA|U|3484
*
9BUP|1|AA|A|3519
9BUP|1|AA|U|3520
9BUP|1|AA|G|3521

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AK

60S ribosomal protein L13

Chain AM

60S ribosomal protein L23