J4_9BUP_012
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 9BUP|1|S9|U|8, 9BUP|1|S9|U|47, 9BUP|1|S9|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_012 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.3113
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|S9|A|7
9BUP|1|S9|U|8
9BUP|1|S9|A|9
9BUP|1|S9|G|10
*
9BUP|1|S9|C|25
9BUP|1|S9|A|26
9BUP|1|S9|G|27
9BUP|1|S9|G|28
*
9BUP|1|S9|C|42
9BUP|1|S9|C|43
9BUP|1|S9|G|44
9BUP|1|S9|U|45
9BUP|1|S9|G|46
9BUP|1|S9|U|47
9BUP|1|S9|C|48
9BUP|1|S9|C|49
*
9BUP|1|S9|G|65
9BUP|1|S9|U|66
Current chains
- Chain S9
- tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: