J4_9BUP_014
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9BUP|1|SA|C|630, 9BUP|1|SA|A|1095, 9BUP|1|SA|C|1097, 9BUP|1|SA|U|1098, 9BUP|1|SA|A|1099, 9BUP|1|SA|U|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_014 not in the Motif Atlas
- Homologous match to J4_8CRE_022
- Geometric discrepancy: 0.0685
- The information below is about J4_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|A|629
9BUP|1|SA|C|630
9BUP|1|SA|G|631
*
9BUP|1|SA|C|1044
9BUP|1|SA|G|1045
9BUP|1|SA|A|1046
9BUP|1|SA|A|1047
9BUP|1|SA|A|1048
9BUP|1|SA|G|1049
*
9BUP|1|SA|C|1090
9BUP|1|SA|C|1091
9BUP|1|SA|A|1092
9BUP|1|SA|U|1093
9BUP|1|SA|A|1094
9BUP|1|SA|A|1095
9BUP|1|SA|A|1096
9BUP|1|SA|C|1097
9BUP|1|SA|U|1098
9BUP|1|SA|A|1099
9BUP|1|SA|U|1100
9BUP|1|SA|G|1101
*
9BUP|1|SA|U|1204
9BUP|1|SA|U|1205
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ag
- 60S ribosomal protein L41
- Chain Ah
- Large ribosomal subunit protein eL43
- Chain S3
- 40S ribosomal protein S26
- Chain SK
- 40S ribosomal protein S15A
- Chain SP
- 40S ribosomal protein S11
- Chain SQ
- 40S ribosomal protein S23
- Chain SU
- 40S ribosomal protein S15
- Chain SV
- 40S ribosomal protein S11
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