J4_9C3H_003

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9C3H|1|L5|G|1269, 9C3H|1|L5|A|1270, 9C3H|1|L5|G|1271, 9C3H|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|C|981
9C3H|1|L5|U|982
9C3H|1|L5|C|983
*
9C3H|1|L5|G|1070
9C3H|1|L5|C|1071
9C3H|1|L5|C|1072
*
9C3H|1|L5|G|1240
9C3H|1|L5|C|1241
9C3H|1|L5|G|1242
9C3H|1|L5|C|1243
*
9C3H|1|L5|G|1268
9C3H|1|L5|G|1269
9C3H|1|L5|A|1270
9C3H|1|L5|G|1271
9C3H|1|L5|C|1272
9C3H|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LK

Large ribosomal subunit protein eL6

Chain Lb

Large ribosomal subunit protein eL29