J4_9C3H_015
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)(PSU)*AAGA(H2U)UG*UC
- Length
- 16 nucleotides
- Bulged bases
- 9C3H|1|S4|U|8
- QA status
- Modified nucleotides: 1MG, 2MG, M2G, PSU, H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9C3H_015 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.2113
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9C3H|1|S4|G|7
9C3H|1|S4|U|8
9C3H|1|S4|1MG|9
9C3H|1|S4|2MG|10
*
9C3H|1|S4|C|25
9C3H|1|S4|M2G|26
9C3H|1|S4|PSU|27
*
9C3H|1|S4|A|43
9C3H|1|S4|A|44
9C3H|1|S4|G|45
9C3H|1|S4|A|46
9C3H|1|S4|H2U|47
9C3H|1|S4|U|48
9C3H|1|S4|G|49
*
9C3H|1|S4|U|65
9C3H|1|S4|C|66
Current chains
- Chain S4
- tRNA-ARG,CCG-1
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
- Chain Lz
- Large ribosomal subunit protein uL16
- Chain SB
- CCR4-NOT transcription complex subunit 3
- Chain SP
- Small ribosomal subunit protein uS19
- Chain ST
- Small ribosomal subunit protein uS13
- Chain Sc
- Small ribosomal subunit protein eS25
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