J4_9CG5_005

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9CG5|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG5_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1453

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9CG5|1|a|C|268
9CG5|1|a|C|269
*
9CG5|1|a|G|370
9CG5|1|a|A|371
9CG5|1|a|G|372
9CG5|1|a|U|373
9CG5|1|a|A|374
9CG5|1|a|G|375
*
9CG5|1|a|U|399
9CG5|1|a|G|400
9CG5|1|a|A|401
9CG5|1|a|A|402
9CG5|1|a|U|403
9CG5|1|a|A|404
9CG5|1|a|U|405
9CG5|1|a|G|406
*
9CG5|1|a|C|421
9CG5|1|a|A|422
9CG5|1|a|A|423
9CG5|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28