J4_9CG6_002

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9CG6|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG6_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0799

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9CG6|1|A|G|142
9CG6|1|A|A|143
9CG6|1|A|G|144
*
9CG6|1|A|C|178
9CG6|1|A|A|179
9CG6|1|A|U|180
9CG6|1|A|A|181
9CG6|1|A|A|182
9CG6|1|A|C|183
9CG6|1|A|G|184
*
9CG6|1|A|C|193
9CG6|1|A|C|194
9CG6|1|A|A|195
9CG6|1|A|A|196
9CG6|1|A|A|197
9CG6|1|A|G|198
*
9CG6|1|A|U|219
9CG6|1|A|G|220
9CG6|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20