J4_9CG6_005

3D structure

PDB id

9CG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + GUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9CG6|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG6_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1471

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9CG6|1|a|C|268
9CG6|1|a|C|269
*
9CG6|1|a|G|370
9CG6|1|a|A|371
9CG6|1|a|G|372
9CG6|1|a|U|373
9CG6|1|a|A|374
9CG6|1|a|G|375
*
9CG6|1|a|U|399
9CG6|1|a|G|400
9CG6|1|a|A|401
9CG6|1|a|A|402
9CG6|1|a|U|403
9CG6|1|a|A|404
9CG6|1|a|U|405
9CG6|1|a|G|406
*
9CG6|1|a|C|421
9CG6|1|a|A|422
9CG6|1|a|A|423
9CG6|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28