J4_9CG7_001

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9CG7|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG7_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1312

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9CG7|1|A|G|115
9CG7|1|A|A|116
9CG7|1|A|G|117
9CG7|1|A|U|118
9CG7|1|A|A|119
9CG7|1|A|A|120
9CG7|1|A|U|121
9CG7|1|A|G|122
*
9CG7|1|A|U|239
9CG7|1|A|G|240
*
9CG7|1|A|C|286
9CG7|1|A|U|287
9CG7|1|A|A|288
9CG7|1|A|G|289
*
9CG7|1|A|C|311
9CG7|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17