J4_9CG7_005

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9CG7|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9CG7_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1296

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9CG7|1|a|C|268
9CG7|1|a|C|269
*
9CG7|1|a|G|370
9CG7|1|a|A|371
9CG7|1|a|G|372
9CG7|1|a|U|373
9CG7|1|a|A|374
9CG7|1|a|G|375
*
9CG7|1|a|U|399
9CG7|1|a|G|400
9CG7|1|a|A|401
9CG7|1|a|A|402
9CG7|1|a|U|403
9CG7|1|a|A|404
9CG7|1|a|U|405
9CG7|1|a|G|406
*
9CG7|1|a|C|421
9CG7|1|a|A|422
9CG7|1|a|A|423
9CG7|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28