J4_9CL9_001

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CUGAGGGGGGCU*GGACG*CGGAAGAGAUAAGUG*CACGAAACUUGCCCCGAGAUGAG

Length

55 nucleotides

Bulged bases

9CL9|1|CA|G|2645, 9CL9|1|CA|C|2646, 9CL9|1|CA|C|2676, 9CL9|1|CA|G|2732, 9CL9|1|CA|A|2733, 9CL9|1|CA|A|2765, 9CL9|1|CA|A|2766, 9CL9|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CL9|1|CA|C|2636
9CL9|1|CA|U|2637
9CL9|1|CA|G|2638
9CL9|1|CA|A|2639
9CL9|1|CA|G|2640
9CL9|1|CA|G|2641
9CL9|1|CA|G|2642
9CL9|1|CA|G|2643
9CL9|1|CA|G|2644
9CL9|1|CA|G|2645
9CL9|1|CA|C|2646
9CL9|1|CA|U|2647
*
9CL9|1|CA|G|2673
9CL9|1|CA|G|2674
9CL9|1|CA|A|2675
9CL9|1|CA|C|2676
9CL9|1|CA|G|2677
*
9CL9|1|CA|C|2730
9CL9|1|CA|G|2731
9CL9|1|CA|G|2732
9CL9|1|CA|A|2733
9CL9|1|CA|A|2734
9CL9|1|CA|G|2735
9CL9|1|CA|A|2736
9CL9|1|CA|G|2737
9CL9|1|CA|A|2738
9CL9|1|CA|U|2739
9CL9|1|CA|A|2740
9CL9|1|CA|A|2741
9CL9|1|CA|G|2742
9CL9|1|CA|U|2743
9CL9|1|CA|G|2744
*
9CL9|1|CA|C|2760
9CL9|1|CA|A|2761
9CL9|1|CA|C|2762
9CL9|1|CA|G|2763
9CL9|1|CA|A|2764
9CL9|1|CA|A|2765
9CL9|1|CA|A|2766
9CL9|1|CA|C|2767
9CL9|1|CA|U|2768
9CL9|1|CA|U|2769
9CL9|1|CA|G|2770
9CL9|1|CA|C|2771
9CL9|1|CA|C|2772
9CL9|1|CA|C|2773
9CL9|1|CA|C|2774
9CL9|1|CA|G|2775
9CL9|1|CA|A|2776
9CL9|1|CA|G|2777
9CL9|1|CA|A|2778
9CL9|1|CA|U|2779
9CL9|1|CA|G|2780
9CL9|1|CA|A|2781
9CL9|1|CA|G|2782

Current chains

Chain CA

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13