J4_9CPA_002

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9CPA|1|2|G|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|C|98
9CPA|1|2|A|99
9CPA|1|2|U|100
9CPA|1|2|U|101
9CPA|1|2|A|102
9CPA|1|2|A|103
9CPA|1|2|A|104
9CPA|1|2|U|105
9CPA|1|2|C|106
*
9CPA|1|2|G|345
9CPA|1|2|C|346
9CPA|1|2|C|347
*
9CPA|1|2|G|395
9CPA|1|2|U|396
9CPA|1|2|G|397
9CPA|1|2|A|398
9CPA|1|2|C|399
*
9CPA|1|2|G|421
9CPA|1|2|G|422

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

Small ribosomal subunit protein eS8

Chain N

Ribosomal protein S11

Chain Z

uS12