J4_9D0I_029

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9D0I|1|2a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2a|G|575
9D0I|1|2a|G|576
9D0I|1|2a|G|577
*
9D0I|1|2a|C|764
9D0I|1|2a|G|765
9D0I|1|2a|A|766
9D0I|1|2a|A|767
9D0I|1|2a|A|768
9D0I|1|2a|G|769
*
9D0I|1|2a|C|810
9D0I|1|2a|C|811
9D0I|1|2a|C|812
9D0I|1|2a|U|813
9D0I|1|2a|A|814
9D0I|1|2a|A|815
9D0I|1|2a|A|816
9D0I|1|2a|C|817
9D0I|1|2a|G|818
9D0I|1|2a|A|819
9D0I|1|2a|U|820
9D0I|1|2a|G|821
*
9D0I|1|2a|C|879
9D0I|1|2a|C|880

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2h

30S ribosomal protein S8

Chain 2l

30S ribosomal protein S12

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17