J4_9D7R_028
3D structure
- PDB id
- 9D7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9D7R|1|2y|4SU|8, 9D7R|1|2y|U|47, 9D7R|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D7R_028 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.238
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9D7R|1|2y|A|7
9D7R|1|2y|4SU|8
9D7R|1|2y|A|9
9D7R|1|2y|G|10
*
9D7R|1|2y|C|25
9D7R|1|2y|A|26
9D7R|1|2y|G|27
*
9D7R|1|2y|C|43
9D7R|1|2y|G|44
9D7R|1|2y|U|45
9D7R|1|2y|G7M|46
9D7R|1|2y|U|47
9D7R|1|2y|C|48
9D7R|1|2y|C|49
*
9D7R|1|2y|G|65
9D7R|1|2y|U|66
Current chains
- Chain 2y
- P-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: