J4_9D89_002
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D89_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0388
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|G|297
9D89|1|D|G|298
9D89|1|D|A|299
9D89|1|D|A|300
9D89|1|D|G|301
*
9D89|1|D|C|316
9D89|1|D|G|317
9D89|1|D|C|318
9D89|1|D|G|319
*
9D89|1|D|C|323
9D89|1|D|A|324
9D89|1|D|G|325
*
9D89|1|D|C|337
9D89|1|D|G|338
9D89|1|D|U|339
9D89|1|D|A|340
9D89|1|D|C|341
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L4
- Chain t
- Large ribosomal subunit protein uL24
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