J4_9D89_003

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9D89|1|D|A|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D89_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4983

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9D89|1|D|C|603
9D89|1|D|A|604
9D89|1|D|A|605
9D89|1|D|G|606
*
9D89|1|D|C|626
9D89|1|D|G|627
9D89|1|D|A|628
9D89|1|D|A|629
9D89|1|D|G|630
*
9D89|1|D|C|637
9D89|1|D|G|638
9D89|1|D|A|639
9D89|1|D|G|640
*
9D89|1|D|C|652
9D89|1|D|G|653
9D89|1|D|U|654
9D89|1|D|U|655
9D89|1|D|A|656
9D89|1|D|A|657
9D89|1|D|G|658

Current chains

Chain D

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L35

Chain H

50S ribosomal protein L4

Chain I

50S ribosomal protein L15