J4_9D89_005

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9D89|1|D|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9D89_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0385

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9D89|1|D|G|1312
9D89|1|D|G|1313
9D89|1|D|U|1314
9D89|1|D|U|1315
9D89|1|D|C|1316
*
9D89|1|D|G|1340
9D89|1|D|G|1341
9D89|1|D|U|1342
9D89|1|D|G|1343
9D89|1|D|A|1344
9D89|1|D|G|1345
*
9D89|1|D|C|1406
9D89|1|D|U|1407
*
9D89|1|D|A|1599
9D89|1|D|A|1600
9D89|1|D|U|1601
9D89|1|D|C|1602
9D89|1|D|G|1603
9D89|1|D|U|1604
9D89|1|D|A|1605
9D89|1|D|C|1606

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain K

Large ribosomal subunit protein uL23