3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
9D89|1|D|U|1975
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9D89_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0962
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

9D89|1|D|C|1835
9D89|1|D|U|1836
9D89|1|D|2MG|1837
*
9D89|1|D|C|1909
9D89|1|D|G|1910
*
9D89|1|D|C|1928
9D89|1|D|C|1929
9D89|1|D|U|1930
9D89|1|D|A|1931
9D89|1|D|A|1932
9D89|1|D|G|1933
9D89|1|D|G|1934
9D89|1|D|U|1935
9D89|1|D|A|1936
9D89|1|D|G|1937
*
9D89|1|D|C|1971
9D89|1|D|G|1972
9D89|1|D|A|1973
9D89|1|D|A|1974
9D89|1|D|U|1975
9D89|1|D|G|1976

Current chains

Chain D
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L2

Coloring options:


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