J4_9D89_009
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9D89|1|D|U|1975
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D89_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0962
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|C|1835
9D89|1|D|U|1836
9D89|1|D|2MG|1837
*
9D89|1|D|C|1909
9D89|1|D|G|1910
*
9D89|1|D|C|1928
9D89|1|D|C|1929
9D89|1|D|U|1930
9D89|1|D|A|1931
9D89|1|D|A|1932
9D89|1|D|G|1933
9D89|1|D|G|1934
9D89|1|D|U|1935
9D89|1|D|A|1936
9D89|1|D|G|1937
*
9D89|1|D|C|1971
9D89|1|D|G|1972
9D89|1|D|A|1973
9D89|1|D|A|1974
9D89|1|D|U|1975
9D89|1|D|G|1976
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: