J4_9DFC_013
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9DFC|1|1a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9DFC_013 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.051
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9DFC|1|1a|G|575
9DFC|1|1a|G|576
9DFC|1|1a|G|577
*
9DFC|1|1a|C|764
9DFC|1|1a|G|765
9DFC|1|1a|A|766
9DFC|1|1a|A|767
9DFC|1|1a|A|768
9DFC|1|1a|G|769
*
9DFC|1|1a|C|810
9DFC|1|1a|C|811
9DFC|1|1a|C|812
9DFC|1|1a|U|813
9DFC|1|1a|A|814
9DFC|1|1a|A|815
9DFC|1|1a|A|816
9DFC|1|1a|C|817
9DFC|1|1a|G|818
9DFC|1|1a|A|819
9DFC|1|1a|U|820
9DFC|1|1a|G|821
*
9DFC|1|1a|C|879
9DFC|1|1a|C|880
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
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