J4_9DP7_005

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

9DP7|1|A1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|1674
9DP7|1|A1|G|1675
*
9DP7|1|A1|C|1693
9DP7|1|A1|U|1694
9DP7|1|A1|U|1695
9DP7|1|A1|A|1696
9DP7|1|A1|A|1697
9DP7|1|A1|C|1698
*
9DP7|1|A1|G|1747
9DP7|1|A1|G|1748
9DP7|1|A1|A|1749
9DP7|1|A1|A|1750
9DP7|1|A1|G|1751
9DP7|1|A1|A|1752
9DP7|1|A1|G|1753
*
9DP7|1|A1|U|1772
9DP7|1|A1|C|1773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L22-A

Chain Ag

60S ribosomal protein L34-A

Chain Ak

Large ribosomal subunit protein eL38