J4_9DP7_006
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|G|2130
9DP7|1|A1|A|2131
9DP7|1|A1|C|2132
9DP7|1|A1|U|2133
9DP7|1|A1|G|2134
*
9DP7|1|A1|C|2146
9DP7|1|A1|A|2147
9DP7|1|A1|U|2148
9DP7|1|A1|A|2149
9DP7|1|A1|G|2150
*
9DP7|1|A1|U|2186
9DP7|1|A1|G|2187
9DP7|1|A1|A|2188
9DP7|1|A1|U|2189
9DP7|1|A1|U|2190
*
9DP7|1|A1|A|2317
9DP7|1|A1|U|2318
9DP7|1|A1|U|2319
9DP7|1|A1|A|2320
9DP7|1|A1|A|2321
9DP7|1|A1|C|2322
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
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