J4_9DUK_001

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9DUK|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9DUK_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1171

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9DUK|1|A|G|115
9DUK|1|A|A|116
9DUK|1|A|G|117
9DUK|1|A|U|118
9DUK|1|A|A|119
9DUK|1|A|A|120
9DUK|1|A|U|121
9DUK|1|A|G|122
*
9DUK|1|A|U|239
9DUK|1|A|G|240
*
9DUK|1|A|C|286
9DUK|1|A|U|287
9DUK|1|A|A|288
9DUK|1|A|G|289
*
9DUK|1|A|C|311
9DUK|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17