J4_9E0N_011

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

9E0N|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0N|1|a|G|111
9E0N|1|a|A|112
9E0N|1|a|G|113
9E0N|1|a|U|114
9E0N|1|a|A|115
9E0N|1|a|A|116
9E0N|1|a|C|117
9E0N|1|a|A|118
9E0N|1|a|C|119
*
9E0N|1|a|G|238
9E0N|1|a|G|239
9E0N|1|a|C|240
*
9E0N|1|a|G|286
9E0N|1|a|U|287
9E0N|1|a|A|288
9E0N|1|a|G|289
*
9E0N|1|a|C|311
9E0N|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17