J4_9E0P_003

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

9E0P|1|A|G|1386, 9E0P|1|A|U|1389, 9E0P|1|A|A|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0P|1|A|C|1385
9E0P|1|A|G|1386
9E0P|1|A|A|1387
9E0P|1|A|U|1388
9E0P|1|A|U|1389
9E0P|1|A|A|1390
9E0P|1|A|G|1391
*
9E0P|1|A|C|1409
9E0P|1|A|C|1410
*
9E0P|1|A|G|1863
9E0P|1|A|U|1864
9E0P|1|A|A|1865
9E0P|1|A|C|1866
*
9E0P|1|A|G|2233
9E0P|1|A|G|2234

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain O

Large ribosomal subunit protein bL17

Chain T

Large ribosomal subunit protein uL22