J4_9E0P_011

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

9E0P|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0P|1|a|G|111
9E0P|1|a|A|112
9E0P|1|a|G|113
9E0P|1|a|U|114
9E0P|1|a|A|115
9E0P|1|a|A|116
9E0P|1|a|C|117
9E0P|1|a|A|118
9E0P|1|a|C|119
*
9E0P|1|a|G|238
9E0P|1|a|G|239
9E0P|1|a|C|240
*
9E0P|1|a|G|286
9E0P|1|a|U|287
9E0P|1|a|A|288
9E0P|1|a|G|289
*
9E0P|1|a|C|311
9E0P|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17