J4_9E0P_012

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

9E0P|1|a|C|179, 9E0P|1|a|A|180, 9E0P|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0P|1|a|U|140
9E0P|1|a|U|141
*
9E0P|1|a|A|175
9E0P|1|a|A|176
9E0P|1|a|U|177
9E0P|1|a|A|178
9E0P|1|a|C|179
9E0P|1|a|A|180
9E0P|1|a|C|181
*
9E0P|1|a|G|207
9E0P|1|a|G|208
9E0P|1|a|A|209
9E0P|1|a|A|210
9E0P|1|a|A|211
9E0P|1|a|G|212
*
9E0P|1|a|C|219
9E0P|1|a|G|220

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20