J4_9E16_013
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9E16|1|n|U|8, 9E16|1|n|U|48, 9E16|1|n|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9E16_013 not in the Motif Atlas
- Homologous match to J4_9H3G_015
- Geometric discrepancy: 0.1572
- The information below is about J4_9H3G_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9E16|1|n|G|7
9E16|1|n|U|8
9E16|1|n|G|9
9E16|1|n|G|10
*
9E16|1|n|C|26
9E16|1|n|G|27
9E16|1|n|U|28
*
9E16|1|n|A|44
9E16|1|n|A|45
9E16|1|n|G|46
9E16|1|n|G|47
9E16|1|n|U|48
9E16|1|n|C|49
9E16|1|n|G|50
*
9E16|1|n|C|66
9E16|1|n|C|67
Current chains
- Chain n
- E-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L33 C-
- Chain m
- 30S ribosomal protein S13
Coloring options: