J4_9E6Q_005
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UU*AGUUAG*CC*GCCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9E6Q|1|1|U|1470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9E6Q|1|1|U|1442
9E6Q|1|1|U|1443
*
9E6Q|1|1|A|1467
9E6Q|1|1|G|1468
9E6Q|1|1|U|1469
9E6Q|1|1|U|1470
9E6Q|1|1|A|1471
9E6Q|1|1|G|1472
*
9E6Q|1|1|C|1535
9E6Q|1|1|C|1536
*
9E6Q|1|1|G|1739
9E6Q|1|1|C|1740
9E6Q|1|1|C|1741
9E6Q|1|1|C|1742
9E6Q|1|1|G|1743
9E6Q|1|1|U|1744
9E6Q|1|1|A|1745
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AQ
- Large ribosomal subunit protein eL19
- Chain AU
- Large ribosomal subunit protein uL23
- Chain AX
- Large ribosomal subunit protein uL29
- Chain Ac
- Large ribosomal subunit protein eL34
- Chain Ae
- LSU ribosomal protein L38E
- Chain Af
- Large ribosomal subunit protein eL39
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