J4_9E6Q_010

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAG*CG*UGG*UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E6Q|1|1|G|2757
9E6Q|1|1|A|2758
9E6Q|1|1|A|2759
9E6Q|1|1|G|2760
*
9E6Q|1|1|C|2790
9E6Q|1|1|G|2791
*
9E6Q|1|1|U|2844
9E6Q|1|1|G|2845
9E6Q|1|1|G|2846
*
9E6Q|1|1|U|2882
9E6Q|1|1|C|2883

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AG

Large ribosomal subunit protein uL13

Chain AI

Large ribosomal subunit protein uL14