J4_9EBB_012
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9EBB|1|a|A|567, 9EBB|1|a|A|806
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EBB_012 not in the Motif Atlas
- Homologous match to J4_8B0X_003
- Geometric discrepancy: 0.0616
- The information below is about J4_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.3
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EBB|1|a|G|566
9EBB|1|a|A|567
9EBB|1|a|G|568
*
9EBB|1|a|C|755
9EBB|1|a|G|756
9EBB|1|a|A|757
9EBB|1|a|A|758
9EBB|1|a|A|759
9EBB|1|a|G|760
*
9EBB|1|a|C|801
9EBB|1|a|C|802
9EBB|1|a|G|803
9EBB|1|a|U|804
9EBB|1|a|A|805
9EBB|1|a|A|806
9EBB|1|a|A|807
9EBB|1|a|C|808
9EBB|1|a|G|809
9EBB|1|a|G|810
9EBB|1|a|U|811
9EBB|1|a|G|812
*
9EBB|1|a|C|872
9EBB|1|a|C|873
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain x
- Mitochondrial domain of uncharacterized function (DUF1713)
Coloring options: