J4_9EBV_001
3D structure
- PDB id
- 9EBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.519 Å
Loop
- Sequence
- AAAAAACACGA*UG*UCAGUAACC*GUCCAU
- Length
- 28 nucleotides
- Bulged bases
- 9EBV|1|A|U|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93067.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-cWW-tWW-cSW-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9EBV|1|A|A|6
9EBV|1|A|A|7
9EBV|1|A|A|8
9EBV|1|A|A|9
9EBV|1|A|A|10
9EBV|1|A|A|11
9EBV|1|A|C|12
9EBV|1|A|A|13
9EBV|1|A|C|14
9EBV|1|A|G|15
9EBV|1|A|A|16
*
9EBV|1|A|U|35
9EBV|1|A|G|36
*
9EBV|1|A|U|45
9EBV|1|A|C|46
9EBV|1|A|A|47
9EBV|1|A|G|48
9EBV|1|A|U|49
9EBV|1|A|A|50
9EBV|1|A|A|51
9EBV|1|A|C|52
9EBV|1|A|C|53
*
9EBV|1|A|G|70
9EBV|1|A|U|71
9EBV|1|A|C|72
9EBV|1|A|C|73
9EBV|1|A|A|74
9EBV|1|A|U|75
Current chains
- Chain A
- RNA (81-MER)
Nearby chains
- Chain M
- azaaromatic riboswitch aptamer (yjdF RNA)
Coloring options: