Motif J4_93067.1 Version J4_93067.1 of this group appears in releases 4.4 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 26 | 27 | 1-27 | 4-24 | 6-18 | 7-17 | 8-16 | 11-12 | 13-14 | 20-23 | 21-22 | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9EBV_001 | 9EBV | 0.0000 | 1 | A | azaaromatic riboswitch aptamer (yjdF RNA) | A | 6 | A | 7 | A | 8 | A | 9 | A | 10 | A | 11 | C | 12 | A | 13 | C | 14 | G | 15 | A | 16 | * | U | 35 | G | 36 | * | U | 45 | C | 46 | A | 47 | G | 48 | A | 50 | A | 51 | C | 52 | C | 53 | * | G | 70 | U | 71 | C | 72 | C | 73 | A | 74 | U | 75 | cWW | ncSs | ntWW | tWW | cSW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAAACACGA*UG*UCAGUAACC*GUCCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAACACG**CAGUAAC*UCCA | 1 |
Release history
| Release | 4.4 |
|---|---|
| Date | 2025-12-03 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-cWW-tWW-cSW-F-F-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: