J4_9EC3_011

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GAG*CGAAAG*CCGUAAACGGUG*CC

Length

23 nucleotides

Bulged bases

9EC3|1|a|A|567, 9EC3|1|a|A|806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9EC3_011 not in the Motif Atlas

Homologous match to J4_8B0X_003

Geometric discrepancy: 0.0872

The information below is about J4_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9EC3|1|a|G|566
9EC3|1|a|A|567
9EC3|1|a|G|568
*
9EC3|1|a|C|755
9EC3|1|a|G|756
9EC3|1|a|A|757
9EC3|1|a|A|758
9EC3|1|a|A|759
9EC3|1|a|G|760
*
9EC3|1|a|C|801
9EC3|1|a|C|802
9EC3|1|a|G|803
9EC3|1|a|U|804
9EC3|1|a|A|805
9EC3|1|a|A|806
9EC3|1|a|A|807
9EC3|1|a|C|808
9EC3|1|a|G|809
9EC3|1|a|G|810
9EC3|1|a|U|811
9EC3|1|a|G|812
*
9EC3|1|a|C|872
9EC3|1|a|C|873

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17

Chain x

Mitochondrial domain of uncharacterized function (DUF1713)