J4_9EHO_003
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUAU*AG*CGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9EHO|1|5|A|2123, 9EHO|1|5|U|2126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|2122
9EHO|1|5|A|2123
9EHO|1|5|A|2124
9EHO|1|5|A|2125
9EHO|1|5|U|2126
9EHO|1|5|A|2127
9EHO|1|5|U|2128
*
9EHO|1|5|A|2146
9EHO|1|5|G|2147
*
9EHO|1|5|C|2677
9EHO|1|5|G|2678
9EHO|1|5|A|2679
9EHO|1|5|U|2680
*
9EHO|1|5|A|3667
9EHO|1|5|G|3668
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL22
- Chain R
- Ribosomal protein L19
- Chain d
- Large ribosomal subunit protein eL31
Coloring options: