J4_9EHO_006
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAGAG*UGAUU*AUCAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|3445
9EHO|1|5|A|3446
9EHO|1|5|C|3447
9EHO|1|5|U|3448
9EHO|1|5|G|3449
*
9EHO|1|5|C|3461
9EHO|1|5|A|3462
9EHO|1|5|G|3463
9EHO|1|5|A|3464
9EHO|1|5|G|3465
*
9EHO|1|5|U|3501
9EHO|1|5|G|3502
9EHO|1|5|A|3503
9EHO|1|5|U|3504
9EHO|1|5|U|3505
*
9EHO|1|5|A|3632
9EHO|1|5|U|3633
9EHO|1|5|C|3634
9EHO|1|5|A|3635
9EHO|1|5|A|3636
9EHO|1|5|C|3637
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Large ribosomal subunit protein uL2
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eS32
- Chain p
- Large ribosomal subunit protein eL43
Coloring options: