J4_9EHO_009
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAG*UCGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9EHO|1|5|A|4190
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|4187
9EHO|1|5|C|4188
9EHO|1|5|A|4189
9EHO|1|5|A|4190
9EHO|1|5|G|4191
*
9EHO|1|5|U|4245
9EHO|1|5|C|4246
9EHO|1|5|G|4247
9EHO|1|5|A|4248
9EHO|1|5|U|4249
*
9EHO|1|5|A|4273
9EHO|1|5|C|4274
9EHO|1|5|C|4275
*
9EHO|1|5|G|4284
9EHO|1|5|U|4285
9EHO|1|5|G|4286
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- Large ribosomal subunit protein eL42
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