J4_9EHO_012
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCGUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9EHO|1|AA|A|917, 9EHO|1|AA|A|1701, 9EHO|1|AA|C|1703, 9EHO|1|AA|A|1705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|AA|A|916
9EHO|1|AA|A|917
9EHO|1|AA|G|918
*
9EHO|1|AA|C|1650
9EHO|1|AA|G|1651
9EHO|1|AA|A|1652
9EHO|1|AA|A|1653
9EHO|1|AA|A|1654
9EHO|1|AA|G|1655
*
9EHO|1|AA|C|1696
9EHO|1|AA|C|1697
9EHO|1|AA|G|1698
9EHO|1|AA|U|1699
9EHO|1|AA|A|1700
9EHO|1|AA|A|1701
9EHO|1|AA|A|1702
9EHO|1|AA|C|1703
9EHO|1|AA|G|1704
9EHO|1|AA|A|1705
9EHO|1|AA|U|1706
9EHO|1|AA|G|1707
*
9EHO|1|AA|U|1777
9EHO|1|AA|U|1778
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain MM
- 40S ribosomal protein S11
- Chain OO
- Small ribosomal subunit protein uS15
- Chain PP
- 40S ribosomal protein S14a
- Chain XX
- 40S ribosomal protein S15a
- Chain YY
- Small ribosomal subunit protein uS12
- Chain bb
- 40S ribosomal protein S26
- Chain n
- eS32
- Chain p
- Large ribosomal subunit protein eL43
Coloring options: