J4_9F1D_002
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9F1D|1|A2|A|673, 9F1D|1|A2|A|1084, 9F1D|1|A2|C|1086, 9F1D|1|A2|A|1088
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F1D_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0762
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9F1D|1|A2|A|672
9F1D|1|A2|A|673
9F1D|1|A2|G|674
*
9F1D|1|A2|C|1033
9F1D|1|A2|G|1034
9F1D|1|A2|A|1035
9F1D|1|A2|A|1036
9F1D|1|A2|A|1037
9F1D|1|A2|G|1038
*
9F1D|1|A2|C|1079
9F1D|1|A2|C|1080
9F1D|1|A2|A|1081
9F1D|1|A2|PSU|1082
9F1D|1|A2|A|1083
9F1D|1|A2|A|1084
9F1D|1|A2|A|1085
9F1D|1|A2|C|1086
9F1D|1|A2|G|1087
9F1D|1|A2|A|1088
9F1D|1|A2|U|1089
9F1D|1|A2|G|1090
*
9F1D|1|A2|U|1161
9F1D|1|A2|U|1162
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS26
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- 40S ribosomal protein S13
- Chain An
- Small ribosomal subunit protein uS11
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bp
- 60S ribosomal protein L37a
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