J4_9F1D_007

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9F1D|1|B5|A|2209, 9F1D|1|B5|U|2212, 9F1D|1|B5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|OMC|2208
9F1D|1|B5|A|2209
9F1D|1|B5|A|2210
9F1D|1|B5|A|2211
9F1D|1|B5|U|2212
9F1D|1|B5|A|2213
9F1D|1|B5|U|2214
*
9F1D|1|B5|A|2232
9F1D|1|B5|G|2233
9F1D|1|B5|G|2234
*
9F1D|1|B5|OMC|2667
9F1D|1|B5|A|2668
9F1D|1|B5|U|2669
9F1D|1|B5|G|2670
9F1D|1|B5|U|2671
9F1D|1|B5|U|2672
*
9F1D|1|B5|A|3588
9F1D|1|B5|G|3589

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BP

Large ribosomal subunit protein uL22

Chain BR

Ribosomal protein L19

Chain Bd

60S ribosomal protein L31

Chain Cu

Transcription factor BTF3