3D structure

PDB id
9F1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
Length
21 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9F1D_012 not in the Motif Atlas
Homologous match to J4_8C3A_006
Geometric discrepancy: 0.1007
The information below is about J4_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9F1D|1|B5|G|3366
9F1D|1|B5|A|3367
9F1D|1|B5|C|3368
9F1D|1|B5|PSU|3369
9F1D|1|B5|G|3370
*
9F1D|1|B5|C|3382
9F1D|1|B5|A|3383
9F1D|1|B5|A|3384
9F1D|1|B5|A|3385
9F1D|1|B5|G|3386
*
9F1D|1|B5|U|3422
9F1D|1|B5|G|3423
9F1D|1|B5|A|3424
9F1D|1|B5|U|3425
9F1D|1|B5|U|3426
*
9F1D|1|B5|A|3553
9F1D|1|B5|PSU|3554
9F1D|1|B5|G|3555
9F1D|1|B5|A|3556
9F1D|1|B5|A2M|3557
9F1D|1|B5|C|3558

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain Az
60S ribosomal protein L41
Chain BA
Large ribosomal subunit protein uL2
Chain Bp
60S ribosomal protein L37a

Coloring options:


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