J4_9F58_007

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9F58|1|a|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9F58_007 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.2905

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9F58|1|a|C|2192
9F58|1|a|U|2193
9F58|1|a|G|2194
*
9F58|1|a|C|2248
9F58|1|a|G|2249
*
9F58|1|a|C|2267
9F58|1|a|U|2268
9F58|1|a|U|2269
9F58|1|a|A|2270
9F58|1|a|A|2271
9F58|1|a|G|2272
9F58|1|a|G|2273
9F58|1|a|U|2274
9F58|1|a|A|2275
9F58|1|a|G|2276
*
9F58|1|a|U|2310
9F58|1|a|G|2311
9F58|1|a|A|2312
9F58|1|a|A|2313
9F58|1|a|U|2314
9F58|1|a|G|2315

Current chains

Chain a

25S rRNA

Nearby chains

Chain A

eIF-2-alpha kinase GCN2

Chain c

60S ribosomal protein L2-A