J4_9F9S_001
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 9F9S|1|CP|U|8, 9F9S|1|CP|U|47, 9F9S|1|CP|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_001 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2064
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9F9S|1|CP|G|7
9F9S|1|CP|U|8
9F9S|1|CP|G|9
9F9S|1|CP|G|10
*
9F9S|1|CP|C|25
9F9S|1|CP|G|26
9F9S|1|CP|U|27
*
9F9S|1|CP|A|43
9F9S|1|CP|A|44
9F9S|1|CP|G|45
9F9S|1|CP|A|46
9F9S|1|CP|U|47
9F9S|1|CP|U|48
9F9S|1|CP|C|49
*
9F9S|1|CP|G|65
9F9S|1|CP|C|66
Current chains
- Chain CP
- tRNA P-site, stalled
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 60S ribosomal protein L10
- Chain Sz
- 40S ribosomal protein S25-A
Coloring options: