J4_9F9S_010
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9F9S|1|L1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0715
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|L1|C|2192
9F9S|1|L1|U|2193
9F9S|1|L1|G|2194
*
9F9S|1|L1|C|2248
9F9S|1|L1|G|2249
*
9F9S|1|L1|C|2267
9F9S|1|L1|U|2268
9F9S|1|L1|U|2269
9F9S|1|L1|A|2270
9F9S|1|L1|A|2271
9F9S|1|L1|G|2272
9F9S|1|L1|G|2273
9F9S|1|L1|U|2274
9F9S|1|L1|A|2275
9F9S|1|L1|G|2276
*
9F9S|1|L1|U|2310
9F9S|1|L1|G|2311
9F9S|1|L1|A|2312
9F9S|1|L1|A|2313
9F9S|1|L1|U|2314
9F9S|1|L1|G|2315
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain CP
- Transfer RNA; tRNA
- Chain Ld
- 60S ribosomal protein L41-A
- Chain Lw
- 60S ribosomal protein L2-A
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: